PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00008g02527.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 464aa    MW: 54014.2 Da    PI: 8.3428
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00008g02527.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.5e-07364411347
                               SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                                WT+e ++++ d vk  +       Wk I + ++ ++++++++s+++++
  Peaxi162Scf00008g02527.1 364 YWTKEQEKKFQDTVKSNPLSvnkgFWKEIFKLFP-NKSRESLVSYYFNV 411
                               6****************999999***********.***********996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5115610.021262356IPR000949ELM2 domain
SMARTSM011891.9E-7264316IPR000949ELM2 domain
CDDcd001670.00191365412No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MEVEFDLREI LMKISDEKNK EEEYANVDSR RVEFDAATGQ RMCNGIKADE FVFMNKCYKK  60
FDRKISLDHD KYNVKDVDET SGVSYYEEHL KSVNRSRSVE CGMDEVMKSS VVKENEISRK  120
RKRESSADLL RWVTDVAKDP CDPSIGSLPE RSKWKCYTSD VIWKQVLLLR DEMLLKNSAD  180
TSAQCSVWQK KQKMHPSMYD DNAAAERVRC SQRVQFAKNP LKKALSSASS PSSSLSDKDL  240
IDGLADSLAE SGVHLLWNQR RKRIPVGPQF QADIPEWRQE KCESDSKWLG TQIWPLDKQD  300
QNRMLIERDP IGKGRQDTCG CQYPVSYDCV KFHLAEKQKK VKLELGSAFY RWKFDLMGEE  360
VALYWTKEQE KKFQDTVKSN PLSVNKGFWK EIFKLFPNKS RESLVSYYFN VFLLRLRGQQ  420
NRMDASNIDS DNDEPQFGPR TNCFGRDAKF SIFCSPRKEH KDPI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617230.10.0PREDICTED: AT-rich interactive domain-containing protein 1-like
RefseqXP_016440024.10.0PREDICTED: AT-rich interactive domain-containing protein 1-like isoform X1
TrEMBLM1BPI60.0M1BPI6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000499060.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA177233