PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00008g02527.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

MYB_related

Protein Properties

Length: 464aa MW: 54014.2 Da PI: 8.3428

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00008g02527.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.8	4.5e-07	364	411	3	47
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 WT+e ++++ d vk + Wk I + ++ ++++++++s+++++ Peaxi162Scf00008g02527.1 364 YWTKEQEKKFQDTVKSNPLSvnkgFWKEIFKLFP-NKSRESLVSYYFNV 411 6**************999999*******.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51156	10.021	262	356	IPR000949	ELM2 domain
SMART	SM01189	1.9E-7	264	316	IPR000949	ELM2 domain
CDD	cd00167	0.00191	365	412	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MEVEFDLREI LMKISDEKNK EEEYANVDSR RVEFDAATGQ RMCNGIKADE FVFMNKCYKK 60 FDRKISLDHD KYNVKDVDET SGVSYYEEHL KSVNRSRSVE CGMDEVMKSS VVKENEISRK 120 RKRESSADLL RWVTDVAKDP CDPSIGSLPE RSKWKCYTSD VIWKQVLLLR DEMLLKNSAD 180 TSAQCSVWQK KQKMHPSMYD DNAAAERVRC SQRVQFAKNP LKKALSSASS PSSSLSDKDL 240 IDGLADSLAE SGVHLLWNQR RKRIPVGPQF QADIPEWRQE KCESDSKWLG TQIWPLDKQD 300 QNRMLIERDP IGKGRQDTCG CQYPVSYDCV KFHLAEKQKK VKLELGSAFY RWKFDLMGEE 360 VALYWTKEQE KKFQDTVKSN PLSVNKGFWK EIFKLFPNKS RESLVSYYFN VFLLRLRGQQ 420 NRMDASNIDS DNDEPQFGPR TNCFGRDAKF SIFCSPRKEH KDPI

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MEVEFDLREI LMKISDEKNK EEEYANVDSR RVEFDAATGQ RMCNGIKADE FVFMNKCYKK  60
FDRKISLDHD KYNVKDVDET SGVSYYEEHL KSVNRSRSVE CGMDEVMKSS VVKENEISRK  120
RKRESSADLL RWVTDVAKDP CDPSIGSLPE RSKWKCYTSD VIWKQVLLLR DEMLLKNSAD  180
TSAQCSVWQK KQKMHPSMYD DNAAAERVRC SQRVQFAKNP LKKALSSASS PSSSLSDKDL  240
IDGLADSLAE SGVHLLWNQR RKRIPVGPQF QADIPEWRQE KCESDSKWLG TQIWPLDKQD  300
QNRMLIERDP IGKGRQDTCG CQYPVSYDCV KFHLAEKQKK VKLELGSAFY RWKFDLMGEE  360
VALYWTKEQE KKFQDTVKSN PLSVNKGFWK EIFKLFPNKS RESLVSYYFN VFLLRLRGQQ  420
NRMDASNIDS DNDEPQFGPR TNCFGRDAKF SIFCSPRKEH KDPI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009617230.1	0.0	PREDICTED: AT-rich interactive domain-containing protein 1-like
Refseq	XP_016440024.1	0.0	PREDICTED: AT-rich interactive domain-containing protein 1-like isoform X1
TrEMBL	M1BPI6	0.0	M1BPI6_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400049906	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1772	3	3